rs29755449 SNP Detail

Summary

• ID
  rs29755449
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14938356 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGACAGTG CAGGAAGACA
  TATATCGACT TTTGATACAT TTAATGTTTC TAAACACAAA GTCCAGTTGC ACAGCCAAAA
  GGTGGTTATC TTTCAGCTCT GAGTGGCTGA TGTGTTAGTG ACTGTAGAAA AGGGTAGCAA
  TAGGCAGTGA GAACAGTCCT GGGTCCGGGA GCCCCGAGGC ACTGGAAGTC AGACCATGTG
  R
  TAAAGTCCTG TGAGGCTGGA GTTATTTAAT AGATTACCAC TTGGGTGAGG CAAAACCAGG
  TTGGTCAGTG TGAAGAGGAT GTGTTAATTA AATCCCTTGA AATTAGGAGG TGTGGAGCTC
  TGATCATTAG TGGTAATACA CAAGCTGCTT GTCTCAGGGC ATTTAGCTTG TAATGTTCAG
  AGCTCTGTAA AGACTGTATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49562682	NES12886355	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29755449					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49562682	NES12886355	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14938356 () rs orientation: forward

Symbol	Name	Function Class
Car3	carbonic anhydrase 3	915 bp downstream
Rr397608	regulatory region 397608	1106 bp upstream
Rr573713	regulatory region 573713	1527 bp distal
Rr573714	regulatory region 573714	1173 bp proximal
Rr573715	regulatory region 573715	1269 bp proximal
Rr573716	regulatory region 573716	1812 bp proximal
Tssr28448	transcription start site region 28448	1750 bp downstream
Tssr28449	transcription start site region 28449	1686 bp downstream
Tssr28450	transcription start site region 28450	1643 bp downstream
Tssr28451	transcription start site region 28451	1626 bp downstream
Tssr28452	transcription start site region 28452	1604 bp downstream
Tssr28453	transcription start site region 28453	1591 bp downstream
Tssr28454	transcription start site region 28454	1579 bp downstream
Tssr28455	transcription start site region 28455	1561 bp downstream
Tssr28456	transcription start site region 28456	1524 bp downstream
Tssr28457	transcription start site region 28457	1462 bp downstream
Tssr28458	transcription start site region 28458	1265 bp downstream
Tssr28459	transcription start site region 28459	1228 bp downstream
Tssr28460	transcription start site region 28460	1142 bp downstream
Tssr28461	transcription start site region 28461	1086 bp downstream
Tssr28462	transcription start site region 28462	1049 bp downstream
Tssr28463	transcription start site region 28463	998 bp downstream
Tssr28464	transcription start site region 28464	957 bp downstream
Tssr28465	transcription start site region 28465	818 bp downstream
Tssr32653	transcription start site region 32653	1492 bp upstream
Tssr32654	transcription start site region 32654	759 bp upstream