rs29755445 SNP Detail

Summary

• ID
  rs29755445
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14938734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGCTCTG TAAAGACTGT
  ATCCATTATT TAAGCTATGT CTGGGAGGCA CGTGGTCTCA CACTGATTAA AAATGGTTAC
  TATTCTAGTG CCTGGCTGGA CAAAGCTAGA GGAGGCTGTC TCCCTGGACC TTGTGGCTGT
  GCTCCACGAG GGCATAGGCT CTATTTCCAC CATGGGCATG GCACCATCGG CACCTAATAC
  Y
  GTGTCCAGAA GAATTGAACC ACTTGCTAAG GTTTAGGTGA ACAGATGATA TCATGAAAAA
  GGTTCACTGC CACAATAAAC GTCTTTTGGA GTATTGAAAG CTGATACGTG CTTCTGCATT
  CAAGGGCCAC CATTTTCCAG ATTGAGTACA GGCCTCCAAA CAATTGCACC TCAGGCAGTA
  GAGCTTGTAG AGCAGTTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49562678	NES12886359	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29755445					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49562678	NES12886359	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14938734 () rs orientation: forward

Symbol	Name	Function Class
Car3	carbonic anhydrase 3	1293 bp downstream
Rr397608	regulatory region 397608	728 bp upstream
Rr573713	regulatory region 573713	1905 bp distal
Rr573714	regulatory region 573714	795 bp proximal
Rr573715	regulatory region 573715	891 bp proximal
Rr573716	regulatory region 573716	1434 bp proximal
Tssr28452	transcription start site region 28452	1982 bp downstream
Tssr28453	transcription start site region 28453	1969 bp downstream
Tssr28454	transcription start site region 28454	1957 bp downstream
Tssr28455	transcription start site region 28455	1939 bp downstream
Tssr28456	transcription start site region 28456	1902 bp downstream
Tssr28457	transcription start site region 28457	1840 bp downstream
Tssr28458	transcription start site region 28458	1643 bp downstream
Tssr28459	transcription start site region 28459	1606 bp downstream
Tssr28460	transcription start site region 28460	1520 bp downstream
Tssr28461	transcription start site region 28461	1464 bp downstream
Tssr28462	transcription start site region 28462	1427 bp downstream
Tssr28463	transcription start site region 28463	1376 bp downstream
Tssr28464	transcription start site region 28464	1335 bp downstream
Tssr28465	transcription start site region 28465	1196 bp downstream
Tssr32653	transcription start site region 32653	1870 bp upstream
Tssr32654	transcription start site region 32654	1137 bp upstream