rs29755444 SNP Detail

Summary

• ID
  rs29755444
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14938748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTGTCTCCC TGGACCTTGT GGCTGTGCTC CACGAGGGCA
  TAGGCTCTAT TTCCACCATG GGCATGGCAC CATCGGCACC TAATACTGTG TCCAGAAGAA
  Y
  TGAACCACTT GCTAAGGTTT AGGTGAACAG ATGATATCAT GAAAAAGGTT CACTGCCACA
  ATAAACGTCT TTTGGAGTAT TGAAAGCTGA TACGTGCTTC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49562677	NES12886360	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29755444					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49562677	NES12886360	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14938748 () rs orientation: forward

Symbol	Name	Function Class
Car3	carbonic anhydrase 3	1307 bp downstream
Rr374551	regulatory region 374551	1996 bp upstream
Rr397608	regulatory region 397608	714 bp upstream
Rr573713	regulatory region 573713	1919 bp distal
Rr573714	regulatory region 573714	781 bp proximal
Rr573715	regulatory region 573715	877 bp proximal
Rr573716	regulatory region 573716	1420 bp proximal
Tssr28452	transcription start site region 28452	1996 bp downstream
Tssr28453	transcription start site region 28453	1983 bp downstream
Tssr28454	transcription start site region 28454	1971 bp downstream
Tssr28455	transcription start site region 28455	1953 bp downstream
Tssr28456	transcription start site region 28456	1916 bp downstream
Tssr28457	transcription start site region 28457	1854 bp downstream
Tssr28458	transcription start site region 28458	1657 bp downstream
Tssr28459	transcription start site region 28459	1620 bp downstream
Tssr28460	transcription start site region 28460	1534 bp downstream
Tssr28461	transcription start site region 28461	1478 bp downstream
Tssr28462	transcription start site region 28462	1441 bp downstream
Tssr28463	transcription start site region 28463	1390 bp downstream
Tssr28464	transcription start site region 28464	1349 bp downstream
Tssr28465	transcription start site region 28465	1210 bp downstream
Tssr32653	transcription start site region 32653	1884 bp upstream
Tssr32654	transcription start site region 32654	1151 bp upstream