rs29754741 SNP Detail

Summary

• ID
  rs29754741
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14938835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCTAGAG GAGGCTGTCT
  CCCTGGACCT TGTGGCTGTG CTCCACGAGG GCATAGGCTC TATTTCCACC ATGGGCATGG
  CACCATCGGC ACCTAATACT GTGTCCAGAA GAATTGAACC ACTTGCTAAG GTTTAGGTGA
  ACAGATGATA TCATGAAAAA GGTTCACTGC CACAATAAAC GTCTTTTGGA GTATTGAAAG
  Y
  TGATACGTGC TTCTGCATTC AAGGGCCACC ATTTTCCAGA TTGAGTACAG GCCTCCAAAC
  AATTGCACCT CAGGCAGTAG AGCTTGTAGA GCAGTTTGCC ATGAGCTGCC ATCTAAAATG
  GCTCTGGAAC CCGTCAGCCT TATTCTTCTG GGTATAATTG CAGGTATCTT AGCATTTCAA
  AGTGGGGAGA AGCCAATGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49562674	NES12886363	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29754741					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49562674	NES12886363	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14938835 () rs orientation: forward

Symbol	Name	Function Class
Car3	carbonic anhydrase 3	1394 bp downstream
Rr374551	regulatory region 374551	1909 bp upstream
Rr397608	regulatory region 397608	627 bp upstream
Rr573714	regulatory region 573714	694 bp proximal
Rr573715	regulatory region 573715	790 bp proximal
Rr573716	regulatory region 573716	1333 bp proximal
Tssr28457	transcription start site region 28457	1941 bp downstream
Tssr28458	transcription start site region 28458	1744 bp downstream
Tssr28459	transcription start site region 28459	1707 bp downstream
Tssr28460	transcription start site region 28460	1621 bp downstream
Tssr28461	transcription start site region 28461	1565 bp downstream
Tssr28462	transcription start site region 28462	1528 bp downstream
Tssr28463	transcription start site region 28463	1477 bp downstream
Tssr28464	transcription start site region 28464	1436 bp downstream
Tssr28465	transcription start site region 28465	1297 bp downstream
Tssr32653	transcription start site region 32653	1971 bp upstream
Tssr32654	transcription start site region 32654	1238 bp upstream