rs29754738 SNP Detail

Summary

• ID
  rs29754738
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14938879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAAG GGCCACCATT TTCCAGATTG
  R
  GTACAGGCCT CCAAACAATT GCACC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49562671	NES12886365	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	A	G	G	G	G	A		G	A	A	G		A
ss134617923	ENSMUSSNP5745179	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						G
ss320667831	CHEV_3_14873819	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29754738					SNP	A	A	G	A	G	A	G	G	G	G	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49562671	NES12886365	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14938879 () rs orientation: forward

Symbol	Name	Function Class
Car3	carbonic anhydrase 3	1438 bp downstream
Rr374551	regulatory region 374551	1865 bp upstream
Rr397608	regulatory region 397608	583 bp upstream
Rr573714	regulatory region 573714	650 bp proximal
Rr573715	regulatory region 573715	746 bp proximal
Rr573716	regulatory region 573716	1289 bp proximal
Tssr28457	transcription start site region 28457	1985 bp downstream
Tssr28458	transcription start site region 28458	1788 bp downstream
Tssr28459	transcription start site region 28459	1751 bp downstream
Tssr28460	transcription start site region 28460	1665 bp downstream
Tssr28461	transcription start site region 28461	1609 bp downstream
Tssr28462	transcription start site region 28462	1572 bp downstream
Tssr28463	transcription start site region 28463	1521 bp downstream
Tssr28464	transcription start site region 28464	1480 bp downstream
Tssr28465	transcription start site region 28465	1341 bp downstream
Tssr32654	transcription start site region 32654	1282 bp upstream