rs29754111 SNP Detail

Summary

• ID
  rs29754111
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14939237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATAATGGT GTGCTTGAAA
  GCCTGCAGGG AGGATGGCAG CAGGTGGTAG GCTGAGGGGT GCAAATACTT TCTAGTTCCT
  ACATTTATAA ATTATTATAG AACTGGGGAC TCCAATGTAA AACATTTCAA AATTCAAATA
  ACTGACTCAT TTCGTAGACA AGTGAGAACT ATTCTACGTA GACAGTGTAT GTGTAGACAG
  Y
  TACAGTTCTC AGCATCTAAC TGGGGCCATT TATGTCATTA AACAAATCTT ATTGAGATGA
  ACAAGTCCTA AATAGGTACA TAAGATACAA GAATAACAAC CAACACAAGC AAAATTAACC
  TAAAAAATTA GCTGCATAGT CCAATAACAC ATTAGCTGCA TTTACTGAAA ATTAGTTCTA
  GATATTCTTC AATTTAAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49562664	NES12886372	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29754111					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49562664	NES12886372	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14939237 () rs orientation: forward

Symbol	Name	Function Class
Car3	carbonic anhydrase 3	1796 bp downstream
Rr374551	regulatory region 374551	1507 bp upstream
Rr397608	regulatory region 397608	225 bp upstream
Rr573714	regulatory region 573714	292 bp proximal
Rr573715	regulatory region 573715	388 bp proximal
Rr573716	regulatory region 573716	931 bp proximal
Tssr28461	transcription start site region 28461	1967 bp downstream
Tssr28462	transcription start site region 28462	1930 bp downstream
Tssr28463	transcription start site region 28463	1879 bp downstream
Tssr28464	transcription start site region 28464	1838 bp downstream
Tssr28465	transcription start site region 28465	1699 bp downstream
Tssr32654	transcription start site region 32654	1640 bp upstream