rs29754110 SNP Detail

Summary

• ID
  rs29754110
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14939263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGAGGATG GCAGCAGGTG
  GTAGGCTGAG GGGTGCAAAT ACTTTCTAGT TCCTACATTT ATAAATTATT ATAGAACTGG
  GGACTCCAAT GTAAAACATT TCAAAATTCA AATAACTGAC TCATTTCGTA GACAAGTGAG
  AACTATTCTA CGTAGACAGT GTATGTGTAG ACAGCTACAG TTCTCAGCAT CTAACTGGGG
  M
  CATTTATGTC ATTAAACAAA TCTTATTGAG ATGAACAAGT CCTAAATAGG TACATAAGAT
  ACAAGAATAA CAACCAACAC AAGCAAAATT AACCTAAAAA ATTAGCTGCA TAGTCCAATA
  ACACATTAGC TGCATTTACT GAAAATTAGT TCTAGATATT CTTCAATTTA AGAATGAACT
  CTGGGCACGT ATAGTATATA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49562663	NES12886373	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29754110					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49562663	NES12886373	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14939263 () rs orientation: forward

Symbol	Name	Function Class
Car3	carbonic anhydrase 3	1822 bp downstream
Rr374551	regulatory region 374551	1481 bp upstream
Rr397608	regulatory region 397608	199 bp upstream
Rr573714	regulatory region 573714	266 bp proximal
Rr573715	regulatory region 573715	362 bp proximal
Rr573716	regulatory region 573716	905 bp proximal
Tssr28461	transcription start site region 28461	1993 bp downstream
Tssr28462	transcription start site region 28462	1956 bp downstream
Tssr28463	transcription start site region 28463	1905 bp downstream
Tssr28464	transcription start site region 28464	1864 bp downstream
Tssr28465	transcription start site region 28465	1725 bp downstream
Tssr32654	transcription start site region 32654	1666 bp upstream