rs29754109 SNP Detail

Summary

• ID
  rs29754109
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14939268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTC AGCATCTAAC TGGGGCCATT
  Y
  ATGTCATTAA ACAAATCTTA TTGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49562662	NES12886374	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T	C	T	C	C	T		T	T	T	T		T
ss320667841	CHEV_3_14874208	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29754109					SNP	T	C	T	C	T	C	T	C	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49562662	NES12886374	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14939268 () rs orientation: forward

Symbol	Name	Function Class
Car3	carbonic anhydrase 3	1827 bp downstream
Rr374551	regulatory region 374551	1476 bp upstream
Rr397608	regulatory region 397608	194 bp upstream
Rr573714	regulatory region 573714	261 bp proximal
Rr573715	regulatory region 573715	357 bp proximal
Rr573716	regulatory region 573716	900 bp proximal
Tssr28461	transcription start site region 28461	1998 bp downstream
Tssr28462	transcription start site region 28462	1961 bp downstream
Tssr28463	transcription start site region 28463	1910 bp downstream
Tssr28464	transcription start site region 28464	1869 bp downstream
Tssr28465	transcription start site region 28465	1730 bp downstream
Tssr32654	transcription start site region 32654	1671 bp upstream