rs29754108 SNP Detail

Summary

• ID
  rs29754108
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14939288 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGGGGTG CAAATACTTT
  CTAGTTCCTA CATTTATAAA TTATTATAGA ACTGGGGACT CCAATGTAAA ACATTTCAAA
  ATTCAAATAA CTGACTCATT TCGTAGACAA GTGAGAACTA TTCTACGTAG ACAGTGTATG
  TGTAGACAGC TACAGTTCTC AGCATCTAAC TGGGGCCATT TATGTCATTA AACAAATCTT
  W
  TTGAGATGAA CAAGTCCTAA ATAGGTACAT AAGATACAAG AATAACAACC AACACAAGCA
  AAATTAACCT AAAAAATTAG CTGCATAGTC CAATAACACA TTAGCTGCAT TTACTGAAAA
  TTAGTTCTAG ATATTCTTCA ATTTAAGAAT GAACTCTGGG CACGTATAGT ATATAATTTA
  GCATAAAATA TAAAATTATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49562661	NES12886375	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29754108					SNP	A	A	A	A	A	T	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49562661	NES12886375	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14939288 () rs orientation: forward

Symbol	Name	Function Class
Car3	carbonic anhydrase 3	1847 bp downstream
Rr374551	regulatory region 374551	1456 bp upstream
Rr397608	regulatory region 397608	174 bp upstream
Rr573714	regulatory region 573714	241 bp proximal
Rr573715	regulatory region 573715	337 bp proximal
Rr573716	regulatory region 573716	880 bp proximal
Tssr28462	transcription start site region 28462	1981 bp downstream
Tssr28463	transcription start site region 28463	1930 bp downstream
Tssr28464	transcription start site region 28464	1889 bp downstream
Tssr28465	transcription start site region 28465	1750 bp downstream
Tssr32654	transcription start site region 32654	1691 bp upstream