rs29754107 SNP Detail

Summary

• ID
  rs29754107
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14939291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGTGCAA ATACTTTCTA
  GTTCCTACAT TTATAAATTA TTATAGAACT GGGGACTCCA ATGTAAAACA TTTCAAAATT
  CAAATAACTG ACTCATTTCG TAGACAAGTG AGAACTATTC TACGTAGACA GTGTATGTGT
  AGACAGCTAC AGTTCTCAGC ATCTAACTGG GGCCATTTAT GTCATTAAAC AAATCTTATT
  R
  AGATGAACAA GTCCTAAATA GGTACATAAG ATACAAGAAT AACAACCAAC ACAAGCAAAA
  TTAACCTAAA AAATTAGCTG CATAGTCCAA TAACACATTA GCTGCATTTA CTGAAAATTA
  GTTCTAGATA TTCTTCAATT TAAGAATGAA CTCTGGGCAC GTATAGTATA TAATTTAGCA
  TAAAATATAA AATTATTAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49562660	NES12886376	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29754107					SNP	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49562660	NES12886376	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14939291 () rs orientation: forward

Symbol	Name	Function Class
Car3	carbonic anhydrase 3	1850 bp downstream
Rr374551	regulatory region 374551	1453 bp upstream
Rr397608	regulatory region 397608	171 bp upstream
Rr573714	regulatory region 573714	238 bp proximal
Rr573715	regulatory region 573715	334 bp proximal
Rr573716	regulatory region 573716	877 bp proximal
Tssr28462	transcription start site region 28462	1984 bp downstream
Tssr28463	transcription start site region 28463	1933 bp downstream
Tssr28464	transcription start site region 28464	1892 bp downstream
Tssr28465	transcription start site region 28465	1753 bp downstream
Tssr32654	transcription start site region 32654	1694 bp upstream