rs29753962 SNP Detail

Summary

• ID
  rs29753962
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:16158343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTGACTCA TGCCTTCCTT
  TACCAAATAT TTGTGTCCAT GGTCTCATTA GTGCCTAGAC CAGGTTTGTG TTTCAGAGAT
  CTTATTTATT TCTTTAACTA GACTTGGACA CACCTCCTGA AAACAAAAGT AACCAACTAA
  CCATCCAAAC AAACAAGTGT GTTTGTGTGT CAGAGAAAGG AGCAAAGGAC TATAAGCAGT
  R
  GAGTCGAACA CATAACCAAA GTGGGTGTCA TCACTGTCCT CAACGATTCT GTCTGACCTA
  CAGAGGGAGT TCCAGATAAT TGTATATTTT ATCTATTTTA TTTCTTTTAT CTCTCTTTTA
  TTGTCTGTTT GTCTGCCAGT CTGTATGTGT CTCTGTGTGT GTGTCTTCCT ATCTAAGGCT
  AGACAGAGAG ACTACATCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49563918	NES12893670	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29753962					SNP	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49563918	NES12893670	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16158343 () rs orientation: forward

Symbol	Name	Function Class
Rr573783	regulatory region 573783	759 bp distal
Rr573784	regulatory region 573784	1093 bp proximal