rs29753958 SNP Detail

Summary

• ID
  rs29753958
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:16160047 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTTCTTCC TTCCTTCCTT
  CCTTCCTTCC TTCCTTCCTT CCTTCCTTCC TTCCTTTCTC TCTCTCTTTC TTTCTTCTTT
  CTTTCCTATT GTGTAATATT GTGTATTCAT TTTCATGTAC ATGAGGATCT CTCTCTCTCT
  TTCTCTCTCT CTCTCTTTCT CTCTCTCTCT CTCCATCCCT GAATTTCAGA ATGATGGACT
  W
  TTAACTCATA AGTTTCTCTT TTTCATCTTC ATCATGTCCA CCACCTGTGT AGTATGTCTG
  CATGGCATGC CTAGTGCCCA TGAGATGATT ACTTATTTAT TTCTTCAGTC TGGGGTTATG
  TAGGCTCTGA CCTAACAGAT CTATCCTGAA TATCAAACAA AACAACATAA GTAAGAGTGA
  TTGTGTCAGG GAAAGGAGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49563914	NES12893615	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29753958					SNP	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49563914	NES12893615	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16160047 () rs orientation: forward

Symbol	Name	Function Class
Rr573784	regulatory region 573784	590 bp distal