rs29753893 SNP Detail

Summary

• ID
  rs29753893
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14945870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACCTAAC AAGCTGTTAG
  GATCTGGGTA GCACTGGGTG CACACTCAAG CAGCATAAAC TGACAAGTTT CCCAAGGTGC
  AGTGGTAGGG TTGGTTTTAT TCTTTTCTTT CCAATCCACT GAACCAAAAA TAAGTGAGGG
  ACTATTAGGA ACATAGCACA GTTCTAGGTC TCAGATGTTT TTCAATACAA AGGTAATTAC
  Y
  ATAATTGTTT CCCAGACCTT TGAGAAAAGA ATTACCTTAT AGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG AGAGAGAGAG AGAGAGAGAG GGAGAGAGAG AGAGAGAGAC AGAGAGACAG
  AGAGAGAGAC AGAGAGAGAG AGAGACAGAG AGAGAGACAG AGAGAGAGAC AGAGAGATAC
  AGAAATACAG AGAGAGAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49562559	NES12886130	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29753893					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49562559	NES12886130	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14945870 () rs orientation: forward

Symbol	Name	Function Class
Rr397609	regulatory region 397609	284 bp downstream
Rr573718	regulatory region 573718	1053 bp distal
Rr573719	regulatory region 573719	740 bp distal
Rr573720	regulatory region 573720	within coordinates
Rr573721	regulatory region 573721	1988 bp proximal