rs29753885 SNP Detail

Summary

• ID
  rs29753885
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14946491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACACACA CACACACACA
  CACACACATG CACGCACGCA CTTAGGAACA TTCTTTAATA TTCTGCAGCT TTGGCATATG
  GTCCCAGAGT TATTCTGTCC TCCCATGTTT CATACCATGG TTACTACTTT TGTGCTATGG
  GTCATCACTG AGTGAAACAG GTGTTGCTTG AGCAAAATCC TATGATACCT GGGCAGTCAA
  K
  CTGGTAACTA AGATGTGTGC TAAATAGCTA TTGGCAGGCA GTGTTTACAG CATGGCTATA
  CTGGATAAAG GATGGTTCAT ATCCTGGGTG GGATGAAGCA GAACATTGTC GGATTTTATG
  AGAATAGTAG ATGATAAAAA TCTCATAGAT TGTGTATTTC AGGAATTTCC CATTTACTAC
  TTCCTGTTCT GGCTGACCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49562551	NES12886060	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29753885					SNP	G	G	G	G	G	G	T	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49562551	NES12886060	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14946491 () rs orientation: forward

Symbol	Name	Function Class
Rr397609	regulatory region 397609	905 bp downstream
Rr573718	regulatory region 573718	1674 bp distal
Rr573719	regulatory region 573719	1361 bp distal
Rr573720	regulatory region 573720	613 bp distal
Rr573721	regulatory region 573721	1367 bp proximal