rs29753393 SNP Detail

Summary

• ID
  rs29753393
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14939792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATCTAAC CATGTTTACA
  TGTTATTTTC ATTTTGGGCA CTAGATGGCG ATAAAATCTC TGTTGCAAAT TAATAGCTCT
  TAAAGCCACC CTATGTTACA ATCACGTAGA TGTCTAAGTT GCTAAGTTTT TCAAACTACT
  TTGAACTGAC ATCATGTTTC CTTTGCTTAC AGGTTTAATA TTTTCTATTA ATAGTGACTG
  R
  TCAAAAAGAT GAAGGATTTT TACTTATTCA TAAGAATCTT AACTGAAAAA GGGAGGTGAG
  GCTAACTGGG AAGCACTCAC TGGACTGCGA GACTGATAAA CACTGAGCAT ATAAGGTCCT
  ATCCCGTATG TAGACAGATG GGAAAAATCA CACAGCGTCT GCTGGACAGG AGCCTACGGG
  GGACTGTAGT CTGCGTGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49562656	NES12886380	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29753393					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49562656	NES12886380	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14939792 () rs orientation: forward

Symbol	Name	Function Class
Rr374551	regulatory region 374551	952 bp upstream
Rr397608	regulatory region 397608	30 bp downstream
Rr573714	regulatory region 573714	within coordinates
Rr573715	regulatory region 573715	146 bp distal
Rr573716	regulatory region 573716	376 bp proximal
Rr573717	regulatory region 573717	1707 bp proximal