rs29753309 SNP Detail

Summary

• ID
  rs29753309
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50788963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGTAAGA TCCTTTGTGG
  TTTGAATGCA GATTTGGTCA GCTTTGATCT CTTTAAATTC ATCTTTCTGT ACTTCAAAAA
  TAAGGCCTCC ACTCTAAGAT TGTCTGATGG AATTATTTAA CTTGATCTTT ACCTAAATAT
  AGCATCATAT TCCCAAGCCT TTGTGTAGGA TCATGATACT ATAATTTCAG AGTGGGTAGA
  Y
  GGAGCTGATG TCTGGGACCT GTCAGGTTTA AAGGGAAAAT GATTCCCTTT TCTCAGTCAG
  TGAGTTTCCA GCTATGAAGT CTCAAATTCA CTCAAACCAT GAGGCAGGGG CTCCTCACCT
  AGCAGCTGGG TTCTGACCAG AAGTTTGGGG GGTTTGGGGT TATGCCAAGT TTACTGGGCA
  ATTTACACGC TACATGTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47875312	NES11685746	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29753309					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47875312	NES11685746	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50788963 () rs orientation: forward

Symbol	Name	Function Class
C530044C16Rik	RIKEN cDNA C530044C16 gene	within coordinates
Gm31455	predicted gene, 31455	within coordinates
Gm44109	predicted gene, 44109	within coordinates
Rr543	regulatory region 543	within coordinates
Rr1255	regulatory region 1255	162 bp distal
Rr630074	regulatory region 630074	1901 bp distal
Rr630076	regulatory region 630076	656 bp proximal