rs29751298 SNP Detail

Summary

• ID
  rs29751298
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109482731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCAGGAT TCTTATAGGG
  TATGACCTTA CTAAACACAA ACATGCTGCT CTTAGTCCTA GGCTTCAACT CAAAGGCACT
  TCACATTTAT CCCATTAGAC ATGTGTGTAT TTTTTTTTCC TAAGAAAATG ATTTCATTTT
  ATTTCAAGGA AGCAATGTGA AGTAGGTGTA TTTGCAGAAG GAAAATGTGC TAATAAGAAG
  W
  AGTTAATCAT CCTCACGTGA TATTAAATAA TTCTCTCAGA CACATTTATA CCCTTAAAAT
  TACATGTGAG CCTATTAATA AAAAGAAATT AATTTTCATG TTGAAAATTT AAAAATGTAG
  CGTCGGTGTT GTAGTGCTTT TCTTAACTTT TGAATGTAGT AAGTGCAATT TTCATTTAAT
  GTTTAACTTC ACTAATAGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46878891	NES10702947	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29751298					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46878891	NES10702947	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109482731 () rs orientation: forward

Symbol	Name	Function Class
Rr583431	regulatory region 583431	1945 bp distal
Rr583432	regulatory region 583432	1498 bp distal
Rr583433	regulatory region 583433	956 bp distal
Tssr31300	transcription start site region 31300	1425 bp downstream
Tssr31301	transcription start site region 31301	1398 bp downstream
Tssr31302	transcription start site region 31302	1389 bp downstream
Vav3	vav 3 oncogene	Intron