rs29749785 SNP Detail

Summary

• ID
  rs29749785
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109484901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCAGACT TTAATGATCC
  TACTAGTCTT TTACAAACAC ATTTTGAAAA TAGTTGAGGT GAAAATAAAT TCCATGTTTA
  AATTTTTTGC TTTACCCAAG AATCCTAGAA TCTTCAGGAA ATGGCTTTGA GGACCTTGAG
  GTATTACCTC CCCCCTTTCA ACATTTCAGT GATTTAACTT ATGAATGAAG CTACCCTGAG
  R
  AAAATCTACA GCTTATGTGT ACTTCTTAAA TGGGGGCTTC TCTGACGAAA CCATGTCCCT
  GTACCCACAA AGACAAATTC CAACACACAT AAAAAGAAAG TTCCTCTTAG GAAAATCTCA
  ATAATTCAAT GGTCCCACAT ACAACTTCAC ATCTACTTGT ATAACAAAAA TTAAAAAAGA
  AATAAATCCT TCATTAGTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46878975	NES10702645	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	A	G	G	G		A	G	G	A		A
ss320870010	CHEV_3_109380503	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29749785					SNP	G	G	G	A	G	G	A	G	G	G	A	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46878975	NES10702645	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109484901 () rs orientation: forward

Symbol	Name	Function Class
Rr583434	regulatory region 583434	617 bp proximal
Vav3	vav 3 oncogene	Intron