rs29745778 SNP Detail

Summary

• ID
  rs29745778
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109480593 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAACACTC TACAGAGCTG
  TATCCAGGCC TGCCCGTGCT CTCCTGATGT CTCCTTTGGT TGCGTCAGTT CTCTCTCTCT
  CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CAGATCCTTT CTTAGTGGCT ATTTTGGATG
  GGAAATGTGC AGGCATGGGC TCAGAGCAGT GAGGGGTTTT TCACTCCAGC TGGAGAAGTT
  M
  TAACTTGTCT AGATGCTGCT AGATGTGGGG GAGAGAAGGC AAAAGCCGGC CAATCAGTGA
  GTGTTCTGTC CGCGGCATGT TCTCTTACTC TGATACCCGT GGCCCCCACC CCCAACCCCC
  CATCACCACC AGGTTGCTCA CCTGAAGGTC TCAAGACTCT GTAAGTGTGA ATCAGTTTTA
  GGAACTAAAC AATAGTAAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss46878828	NES10702901	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	A	C	C	A	C	C		A	C	A
ss320869966	CHEV_3_109376195	CHEVERUD	SCREENING_POP	f	SNP										A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs29745778					SNP	C	C	C	A	C	C	A	C	C	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46878828	NES10702901	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109480593 () rs orientation: forward

Symbol	Name	Function Class
Rr583431	regulatory region 583431	within coordinates
Rr583432	regulatory region 583432	367 bp proximal
Rr583433	regulatory region 583433	641 bp proximal
Tssr31300	transcription start site region 31300	692 bp upstream
Tssr31301	transcription start site region 31301	724 bp upstream
Tssr31302	transcription start site region 31302	742 bp upstream
Vav3	vav 3 oncogene	Intron