rs29744422 SNP Detail

Summary

• ID
  rs29744422
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:80015759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACTTCAGG AAACTAATTT
  GGAGTGAATG GGGACCATCT AGACTTCTCT CTTCTCCTCA TGCTTTCTCT GTCTTGCAGC
  CTCTGCACAC AGAGACTATC GCACTCCCCT TCCTTTGTAA TTTTGATAGG AAAATTCCAA
  GAAGCCTAAT GAAACAGAGC CAGCAGTAAG CTCTCTGAGT GCTGAGGGCT TCTTTTGTTC
  M
  GGCTAATCGA AATGAAAACA GAAATGGGAA ACCCCCCACG GGCCCTGTCC CCACTTTTCC
  ACCCATCCAA CGCTTCTCAA AGGGCTTTCG GATTGTTTAC ATAATCGGAA TACATGTATT
  TCTAACCTCT CTCAGCTTCC AGGAAGTGGC TGCTCATCGT GGTGTGCCAT CCTAAATAAA
  AGAAACTGAT TTTAGGCATC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48381224	NES12267668	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29744422					SNP	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48381224	NES12267668	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:80015759 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cyp1b1	cytochrome P450, family 1, subfamily b, polypeptide 1			Intron
				mRNA-UTR
Tssr149448	transcription start site region 149448			811 bp upstream
Tssr149449	transcription start site region 149449			671 bp upstream