rs29743644 SNP Detail

Summary

• ID
  rs29743644
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109376773 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATAAGCT AAGTAACTTA
  CCCAGATCAC TCAAGTATGA AATGTTGAAG TCATTCTTCT AGTGCCCAGT CACAAGATTC
  TAAAACCTGT GTTCTTTTTT TTTTTTTTTT TTTTTTTGTT GATATAACAT TCTACTTCTA
  TGTTAGGCAA AGAGATAAGG GTCTAAGAGG GCTACTGACA AGACCCGGAA TTTGGAGATA
  Y
  TGTTTCCAGA TTCCTAATAG CATAAAGAGA TGGTAGATAG TGCAGAATTC TATTACAAAT
  TTCCCATCTT CAAGCAAGTG TTTTGATGAG GGATTACAAG TTGTTCTTAT CCATGTCTTG
  AGGAATCCAG ATTTCTAGCT GTAAGTCAAA GAATGGGATC TGAGTCACTC CTTGAGTCAC
  TGCCAGGGCC ATGGTGCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss46876704	NES10707094	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C	C	C		C	C	C	C
ss320869325	CHEV_3_109272375	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs29743644					SNP	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46876704	NES10707094	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109376773 () rs orientation: forward

Symbol	Name	Function Class
Rr583417	regulatory region 583417	1823 bp distal
Rr583418	regulatory region 583418	1874 bp distal
Rr583419	regulatory region 583419	94 bp proximal
Vav3	vav 3 oncogene	Intron