rs29742887 SNP Detail

Summary

• ID
  rs29742887
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50791292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAATGTAT ATTTTTTTTC
  TCTAAAATCT AGGTGAGAGT CCTTAAAGCC ATGAATCCAA GCACACATGT CCAAGAAGAC
  ACAGGAGGTT CAGTATTTCC TACTTAAAAC TAGAACTGTT GGTGGAGAAG CTTGGCAGAA
  CCAGTGCTGC CGAGGACCTT CCCTGAAAAG TGATATTCTA CTCTGAGACA AGCTGTACAC
  R
  GGCAGAAACA CATGCCCGGT GTCACCTAGC CTCTGTGACA GTCCCGGCAG ATCACTTTAG
  TGCCACCCTC CTCTATAGAG CACACTAAGT TGTCAGTGAT GGGATGGATC TTGACCTATT
  GTTATCCTTT GTTTATTGAT TTTTTTCCCC TTTAGTTTGA AAGCAACGTG GATCTCCATC
  TAAAACTATC ATTCAAAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47875350	NES11685648	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29742887					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47875350	NES11685648	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50791292 () rs orientation: forward

Symbol	Name	Function Class
C530044C16Rik	RIKEN cDNA C530044C16 gene	within coordinates
Gm31455	predicted gene, 31455	within coordinates
Gm44109	predicted gene, 44109	within coordinates
Rr543	regulatory region 543	within coordinates
Rr630076	regulatory region 630076	1212 bp distal
Rr630077	regulatory region 630077	767 bp proximal
Rr630078	regulatory region 630078	1294 bp proximal