rs29742884 SNP Detail

Summary

• ID
  rs29742884
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50791042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATGTCATC GCTTTAGACT
  GCAGCCAGGA TGTGGGACTT TCAACAAAGC TGCCCAGAGG ATTCAACATG CAACAGATCT
  GAGAACCACA GACTCAACCC AAAGTTCATC CGAAAGGCTC CAGGATGGCA AAAGATGTTT
  CCTTTCTAAA CATCACTCAC CAGTGCTCCT CTCCCAACTC CAAAATGAAA ACTCTCCTCT
  Y
  TCTCTAAGAA TAGAAAGTAG GGATCTGGTG GTTCTTGGGT ATAATTGAGT TTAATGTATA
  TTTTTTTTCT CTAAAATCTA GGTGAGAGTC CTTAAAGCCA TGAATCCAAG CACACATGTC
  CAAGAAGACA CAGGAGGTTC AGTATTTCCT ACTTAAAACT AGAACTGTTG GTGGAGAAGC
  TTGGCAGAAC CAGTGCTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47875346	NES11685646	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29742884					SNP	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47875346	NES11685646	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50791042 () rs orientation: forward

Symbol	Name	Function Class
C530044C16Rik	RIKEN cDNA C530044C16 gene	within coordinates
Gm31455	predicted gene, 31455	within coordinates
Gm44109	predicted gene, 44109	within coordinates
Rr543	regulatory region 543	within coordinates
Rr630076	regulatory region 630076	962 bp distal
Rr630077	regulatory region 630077	1017 bp proximal
Rr630078	regulatory region 630078	1544 bp proximal