rs29742879 SNP Detail

Summary

• ID
  rs29742879
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109285662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGGGTTTT ATTTCTGTAT
  GCTTTAGTTT TTAAAACAGC ATTTCTTCAA AAAAGTTACA CAAGGGCTGG GGCTGTCTCT
  CTTGGTAGAG TGGTTGATCA GTATTCACAG AGCCTAGGTT TGATCCTCAG AATTGCATAA
  AATATATGAA TAAGATAAAG TAAAATAATT TTCTAGCCAG CTACAAGGAG TACATGGGAG
  K
  CTTCTTTATC CAAAAGAAGG AGCTTGGGGA ACAGAAAATA GTTGGGCAGA ATTTTCTGAT
  GGAGCAGTGG ATAGAGATAC AAATGGAAGA TCGGACTTGC TAGCCTTACA GCTAAGCAAA
  TGCCCTCCCT CACAAGGTGC CAGCAGTGGA CATGCTTGCC ATCCTCCTGT GACAACCTGG
  GTGGCAGCTC TAGGGTATTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
ss46875519	NES10710488	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ
rs29742879					SNP	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46875519	NES10710488	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109285662 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr583413	regulatory region 583413			within coordinates
Vav3	vav 3 oncogene			Intron
				Noncoding-Transcript-Variant