rs29742197 SNP Detail

Summary

• ID
  rs29742197
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109285073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCATCAGT TCATCTTTTT
  TAACCCTTGA AGAGTGTCTG TGAGGAAGGG GTATAACGAG GTTACAACAC TGATGTGGAG
  TGAGTGATAT GTATGAATTT GCTCAATGTG TCAGAGTAGG AAGGTGAGGC CATGGGAGAA
  GCTACACTGA GGGAGATCTG CAAGCCAGGA TTGTATCAGA GGTAGAATCT AATTAAAATC
  Y
  TTTATGATGG TGTCTCTATA AAATCCAATA TTAAATAAAA AGTTAATAAG GATTTCATGC
  TGCTCACATA TCTGCCTATT TTATAAACCA TGCACTTCAG ATGTTGCATA ATTAAGTATA
  AATAAGGATT TGGCTCTTCT CCCCAAACTT ACAAGCTACA GGGGAGGTAA GAACACATAT
  ACTCTCTGTG TATATGTATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46875507	NES10710606	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T		T	T	C		T
ss320868591	CHEV_3_109180675	CHEVERUD	SCREENING_POP	f	SNP								C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29742197					SNP	T	T	T	T	C	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46875507	NES10710606	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109285073 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr583413	regulatory region 583413			436 bp proximal
Vav3	vav 3 oncogene			Intron
				Noncoding-Transcript-Variant