rs29742192 SNP Detail

Summary

• ID
  rs29742192
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50754939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATATGACCT TGTTTATGCT
  CCTACTAATA CATTCATAAA AGGGGGCCAA TTAAGACTTG TAACAGGACC ACAGCCTCAG
  CAGAGATGGG AGCCAGGCTG CAGGGTAGGT TGGGACAATT GACCCCTGGT TATAAATAAT
  GCTATATCCC ACCATGTTAT CTGCCTGTGG CTTGTGGCTC GTATGCCCTC TAACTATTTG
  M
  GGTCAATTTT TAATGCTGAA CTGGCTTCCT TCTACTGAGC AGCTGGTGTG TGCTCAGGGG
  ATAAAACCAA TGTTGGCATT TGCTTTGAGA AAACACAATT AGGCAAGCTG CTGTTGGGTG
  TGGGATGTGA ATATTCACAC GACATGTCCT AAAACACAAG AGTTGGCTTT TGTTCCTTAG
  TCCGGTCTAT GGAGTCTGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47874802	NES11687502	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29742192					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47874802	NES11687502	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50754939 () rs orientation: forward

Symbol	Name	Function Class
C530044C16Rik	RIKEN cDNA C530044C16 gene	within coordinates
Rr543	regulatory region 543	within coordinates
Rr630065	regulatory region 630065	1680 bp distal
Rr630066	regulatory region 630066	within coordinates