rs29742186 SNP Detail

Summary

• ID
  rs29742186
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50754682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCCGTTT TATTCATCAG
  AGCTTCTAAG GTGAAAATAA ACCTCAGTTT AATAGGATTC AGTTATTCCA TGAAACACAC
  GTTGAGGTCC CGTCCCTTTA TGGGCCTCAG AGAGCCTTTA CAGTGGGCAG TTGCTGGTGA
  GAAGATGAAT TGCAAAGCAA AAAGCAAATT TTGGGTTTTA CTCACTTGAA AATGATCTAA
  Y
  AACTGCATTC TGAGTGATGT AAATTTACAC AGGTCTCATT AATGTCCTCT AGATTCCATA
  TGACCTTGTT TATGCTCCTA CTAATACATT CATAAAAGGG GGCCAATTAA GACTTGTAAC
  AGGACCACAG CCTCAGCAGA GATGGGAGCC AGGCTGCAGG GTAGGTTGGG ACAATTGACC
  CCTGGTTATA AATAATGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47874796	NES11687496	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C	C	C	C	C	C	C	C	C	C
ss133184558	ENSMUSSNP1217941	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29742186					SNP	T	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47874796	NES11687496	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50754682 () rs orientation: forward

Symbol	Name	Function Class
C530044C16Rik	RIKEN cDNA C530044C16 gene	within coordinates
Rr543	regulatory region 543	within coordinates
Rr630065	regulatory region 630065	1423 bp distal
Rr630066	regulatory region 630066	within coordinates