rs29741982 SNP Detail

Summary

• ID
  rs29741982
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50790992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGAGCTGC ATGTTAGACT
  CAATGATGCA GAGGTCACAC CCATGGACGT GGATGTCATC GCTTTAGACT GCAGCCAGGA
  TGTGGGACTT TCAACAAAGC TGCCCAGAGG ATTCAACATG CAACAGATCT GAGAACCACA
  GACTCAACCC AAAGTTCATC CGAAAGGCTC CAGGATGGCA AAAGATGTTT CCTTTCTAAA
  Y
  ATCACTCACC AGTGCTCCTC TCCCAACTCC AAAATGAAAA CTCTCCTCTT TCTCTAAGAA
  TAGAAAGTAG GGATCTGGTG GTTCTTGGGT ATAATTGAGT TTAATGTATA TTTTTTTTCT
  CTAAAATCTA GGTGAGAGTC CTTAAAGCCA TGAATCCAAG CACACATGTC CAAGAAGACA
  CAGGAGGTTC AGTATTTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47875344	NES11685645	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29741982					SNP	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47875344	NES11685645	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50790992 () rs orientation: forward

Symbol	Name	Function Class
C530044C16Rik	RIKEN cDNA C530044C16 gene	within coordinates
Gm31455	predicted gene, 31455	within coordinates
Gm44109	predicted gene, 44109	within coordinates
Rr543	regulatory region 543	within coordinates
Rr630076	regulatory region 630076	912 bp distal
Rr630077	regulatory region 630077	1067 bp proximal
Rr630078	regulatory region 630078	1594 bp proximal