rs29741315 SNP Detail

Summary

• ID
  rs29741315
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109284371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTATATAT TTGGAAAATT
  AAAAAATGAA TCATTTAACT ACTGTGGGCT TACTGTCATA ATTTTCACTT ACAGGTGTCT
  CCTTGGGAGC TTTTCTGAAA ATAGGCTATG CTGCCTGAAG GACGACAGGT TCCATGTCTG
  AGAAGTGTAA ACTTTTCTGC GTCTTTTAGA ATTATGCTTG TTGTCATTCC TCATGCATAG
  Y
  GCTAGGATTT ATCGTTTTAG GCAAACATTC TTGTAGGTGG TTTCTAGCTT TTTGTCACTA
  AGGGCATTTT TAGAATTTAG AGGAGGAAAT TGTCACATCC CCTCCCCCCA ACCCCCCAAG
  CTCCCTATAC TCAGCAGGCT CTGGTAAGGA CTGGGAAGTG TGTTTTCTCT GTCTCTGTCT
  GTTTCTCCCC CATGCATGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46875495	NES10710602	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29741315					SNP	C	C	C	T	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46875495	NES10710602	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109284371 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr583413	regulatory region 583413			1138 bp proximal
Vav3	vav 3 oncogene			Intron
				Noncoding-Transcript-Variant