rs29741236 SNP Detail

Summary

• ID
  rs29741236
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50753939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTACCTTGG GGGCGGGGGG
  CGGGGATGGA GGCTTAAGCA TCCTTTATCT GTGTTCACAC ATCTGAGCTG CCACTCTCTT
  ACTGAGTGTT GGGAATGCAC ATCAAGTCTA TACTAACGAA AAATTCTTTC CTGAAGAGGA
  GACAATGGCG GGATACTCCT CTACCGCCTG TATTGTGGCT GCTTATTATG TATCTAACAG
  Y
  GTTCCATGCT GAGCAGAAAA CCTGGTTCCT CCTGCCCACG CGGTTACTAT AAATGTTTCA
  ATCAATCCCT TTCATGCAGC ACAGAGCACA GGAAGCACAA TGTGCAGTGA CTAAACAAGC
  CATTTAAATT CTTCTCAGGC AGAGAGGTTA AGAGAGAGGT GGGGGGAGGA GCGGCGAGAG
  CAGAGATGGC CAAGGTACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45888138	mCV22334786	ABI	CRAMUS_MOUSE	f	SNP		C	T						T
ss47874786	NES11687486	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29741236					SNP	C	C	T	T	T	C	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47874786	NES11687486	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50753939 () rs orientation: forward

Symbol	Name	Function Class
C530044C16Rik	RIKEN cDNA C530044C16 gene	within coordinates
Rr543	regulatory region 543	within coordinates
Rr630065	regulatory region 630065	680 bp distal
Rr630066	regulatory region 630066	within coordinates