rs29740844 SNP Detail

Summary

• ID
  rs29740844
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109375698 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCTATGCA CCAGTCTGCA
  CCATGCTTCT TCTATGTACC TGCCTTTGTG CTTTGGAACG CTTCTCTCTC TCTCTTTGGA
  AAACTTCATG ACCCTTTATG CCCAATGCAC ACGTTACCAT CCCTGAAAGG CTTCAGTGCT
  TTCTGCTGCA GTGGTTGGAG TTGTACCTCA CTCCAGGATC CTTTTGGAGC TTCCCGTGAC
  Y
  CTGTCAGTCT TTATTCTCCC CATTGAGTAG TAAGCTTCTT AGAGGGAGGG ACTGGAACCT
  TTCCTTGGAA GGATCCCATA GGACATCCTC AAAGCTCTTT TGCTTCTTAA AATTTGATGC
  TTGTCACAGG AGGAACATGC TTTGGAGACT AGGGTCTGGT AGCACTTCAG TCTTTGGACA
  TGTAGGTGCT ATACTAGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46876674	NES10707230	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29740844					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46876674	NES10707230	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109375698 () rs orientation: forward

Symbol	Name	Function Class
Rr583417	regulatory region 583417	748 bp distal
Rr583418	regulatory region 583418	799 bp distal
Rr583419	regulatory region 583419	1169 bp proximal
Vav3	vav 3 oncogene	Intron