rs29740555 SNP Detail

Summary

• ID
  rs29740555
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109287455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTGGAGG TCAGAAGGGG
  TCATCAGATC CTGTGGAACC AGTTATAGAT GATTGTTAGC TGACAGGTAG GTGCTGGTAT
  TTGAACCTGA GCCCTCTGGA AGAGCCCTTA GTGCTCTTAA TCGCTGAGCC ATGTCTCCAG
  CTCTTAAGTG TAAGTTTATA AACAGTGACC TGCTTGTTAC TGCTGTGAAC AATGACAGAA
  R
  CATACATTGG AGAAGAGCTT GAGTTACCTG CTCTATCCAG CACATCACTA TAGATGGGCT
  GTTTGATGTG TGCTTCCATG TTTTGTTTTG TTTTTTAATA AATGTCATTT GGCACATATT
  GCTATAGAGA TGTATTTTAA AATGTACCTT AAAATATTTC ATGTGCTTGC AATAAAAGTT
  CCCTTGGCTT TAAAAGCTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46875585	NES10710420	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29740555					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46875585	NES10710420	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109287455 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr583413	regulatory region 583413			1075 bp distal
Tssr31292	transcription start site region 31292			532 bp upstream
Vav3	vav 3 oncogene			Intron
				Noncoding-Transcript-Variant