rs29739524 SNP Detail

Summary

• ID
  rs29739524
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109283891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCTTAGA TATATAAATA
  AGTAAGTTTT GAGACAGAGG TTGAAATGGG CCGCTCCCGC GGTGGTGTGT GGGGTTGCAT
  GGTGAGCAGC TTGCTGGCTG GAGTGAGGTC AGATGATGCA TGAACAAGCA TCCTTTTCTG
  AAGCGTTTTC ACTTGAGAAC TCACATAGAT TAAGCAGCTA ATTCATGGGT GTCATGAACA
  Y
  TGATGCTTTT TTCAAAACAA CCTACAGCTT ATTCTGCAAG TCATATTTGT AAGGCATATG
  GGAGGGTGGT TGAAACAGAA TAATGATGAC ACGAAATAAC CAATTAGGTT AAGGTTATTC
  TGTTAAGCAG TATGGTAGTA CGGGACTGCA GCAATATTTT TAATTCTTAG CTTTGACTAC
  CTGCTTGCAG GACTTTGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46875474	NES10710595	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29739524					SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46875474	NES10710595	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109283891 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr583413	regulatory region 583413			1618 bp proximal
Vav3	vav 3 oncogene			Intron
				Noncoding-Transcript-Variant