rs29738879 SNP Detail

Summary

• ID
  rs29738879
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109375284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCAGAGGT ATCTGTGTTC
  CCAGCTCTTA GAGATATGGT CATGTCTGAT TACCAGTGCC CTCTGATGGT CTGATGGCCA
  CTCCAGAAGT TCTCTCCTTC CTTGTCTTCA CATCTGCATT CTGATGGTCC TGTTTTGCTT
  TCTGGCCATT GCAGAGATCA CTTAACTGGC CTCTCTGACC CCTCCTGTCT TCCTTCCACT
  Y
  AGTCATTTCT AAACTCAGCT GTTTTCCTTT CTCTTTGCAC TTTTGATGGC TCCCCATACT
  ACAGAGGGAA AAGCTTTCCC TTCTTAACAC AGCTTGGTAG ACTTTCCTAA TCTACCTGTA
  ATCTGCTAAT TCAGTGTTGT GTCTTATCTT TTCTTCCTTT TTGCCACATG GGCTTTGTTA
  TGGCTGATAA CCACTCTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46876659	NES10707223	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29738879					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46876659	NES10707223	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109375284 () rs orientation: forward

Symbol	Name	Function Class
Rr583417	regulatory region 583417	334 bp distal
Rr583418	regulatory region 583418	385 bp distal
Rr583419	regulatory region 583419	1583 bp proximal
Vav3	vav 3 oncogene	Intron