rs29738790 SNP Detail

Summary

• ID
  rs29738790
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109287059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATTAAGA ATAGACTGAA
  AGGTCAACTC TCAAAACTTA TTTGCCACAT GGAAGCTTCA TTAAAATAGG CTCTTTAGAA
  CCACACAATA GAGTTATTAC AGAATCAATA CATTTTATTC TCCTCTTTAA TGAAGTCACG
  TGCTTAAATT GCTGTGTGGC TGTGTAATAC TTCCATACTG AGTCTGATTC TTACAATAGT
  Y
  ACATTAAATC CTCTCTGTAA AACCCAACAC CACTCAACAG GGCTTTCACC CATTGTGATA
  GGTGTAATAT TTCTTCATAG GTTACTGAGT ATATTTCAGT TTGTTTTTTA TTAAGTATAA
  ATTTATCGTA TATCTTAAAG ATTGGTTTAT TTTTATTTTA TTCATATGTG TGTTTTACCT
  GCACGTATGT CAGTGCCTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46875570	NES10710510	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29738790					SNP	T	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46875570	NES10710510	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109287059 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr583413	regulatory region 583413			679 bp distal
Tssr31292	transcription start site region 31292			928 bp upstream
Vav3	vav guanine nucleotide exchange factor 3			Intron
				Noncoding-Transcript-Variant