rs29738680 SNP Detail

Summary

• ID
  rs29738680
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50750763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATCAATT TAGGATATTT
  AGGTTATCCA GCATCTTAAG CATTTATCAT TTCTTTGTCA TGAGCACATT CAAATCCTCT
  TCTAGCTATT TTTAATTATG TAATAAATAA TGTTGACAAT AGCAATCCTT CTATGTAGTA
  GTATATCACC TCTACTCATT TTGTCAACAA AAATGTCCTT TAATCCTTCC CATGCCCTTG
  M
  GAATTGGTTT GACCATTTGA GATCCACTTC TCTAGAGGTG CCTACCATGT TGAGAAGGAA
  GCCTTCCTTA GGAACCCCAG CCTGCACTCA GCCTGTAGCT CACTCTGGCT CCCTATCTAA
  AAATGAAACC AAATCAAACC AGAAAGGCCG AAGAAGTGAC TTCATGGCCA TAGTGATGAT
  TAAAGTGTTA CTGAACAAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47874760	NES11687650	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29738680					SNP	A	A	A	A	A	A	A	A	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47874760	NES11687650	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50750763 () rs orientation: forward

Symbol	Name	Function Class
Rr543	regulatory region 543	within coordinates
Rr630065	regulatory region 630065	1822 bp proximal