rs29738512 SNP Detail

Summary

• ID
  rs29738512
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:109246435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACACATGA TCTGGATTTT
  GGAAATATTT TAACAGTATT AAGGGATGAT CTGATGCTAC CTAAAATGAA ATGCTTGGCT
  AGTCTTTGCT TTTTCCTTAT CATCTTTCCT CTTTTCCAGC GCCACTTCTT CTTATGCAGG
  ACCACATTTT AAATGGCAAG TCATGTGTGT TTTGTTTGTA AAGATCTATA ATGAGTAACA
  Y
  GGCTTACAGT ACTTGCCTCT TTTTGATGGT TTTGCATTCT GAGTTTTTAG GAAAGTGGTA
  GTCAACAGCC AACCCCCCCC CCCCAAAAAA AATCACATGG AAAATTCCAG AAAGAAAAAG
  TATATATATT TTATACATTC TTTCACGATT TATGATTATA ATGTTCTATT TTATTGCAAC
  ACTGCTGTTG ATAATCTTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	KK/HlJ	WSB/EiJ
ss46875102	NES10712194	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	KK/HlJ	WSB/EiJ
rs29738512					SNP	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46875102	NES10712194	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109246435 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13716	CpG island 13716	1009 bp proximal
Rr583407	regulatory region 583407	1044 bp proximal
Tssr31282	transcription start site region 31282	1220 bp upstream
Tssr31283	transcription start site region 31283	1345 bp upstream
Tssr31284	transcription start site region 31284	1508 bp upstream
Tssr31285	transcription start site region 31285	1543 bp upstream
Tssr31286	transcription start site region 31286	1552 bp upstream
Tssr31287	transcription start site region 31287	1584 bp upstream
Tssr31288	transcription start site region 31288	1612 bp upstream
Tssr31289	transcription start site region 31289	1635 bp upstream
Tssr31290	transcription start site region 31290	1674 bp upstream
Vav3	vav 3 oncogene	1534 bp upstream