rs29737944 SNP Detail

Summary

• ID
  rs29737944
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109374956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTTTCTA TCACATGGTA
  CAGAGGAGTG TGTCCTCCTT CTTACCCCTG AACTCAGCCC AGGAGGAAAC CAGATCGGAA
  GGGTTGGTCT AATTGAGAGT TCCCATGTGC CATTTAGTGA TTATTGTGCC CTCTGGTGTT
  TTTCTGAATT TATTGCCTGT GTAAATCGGC ATGCAGAGCT TTTGGGGATA GCCCATGGGG
  Y
  ACTGGTCTGC TGAGTCTTAG TTGCAAGATG AACTGGTGCG TGGAGAATGG ACTGCTCCCC
  CTGGAAGACA CTTGTTAACA GATAGACTCT TTTATTCTTT GTCATCTTCG TTTTCGACTC
  AGAACAGCTC CAGAGGTATC TGTGTTCCCA GCTCTTAGAG ATATGGTCAT GTCTGATTAC
  CAGTGCCCTC TGATGGTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46876644	NES10707216	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29737944					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46876644	NES10707216	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109374956 () rs orientation: forward

Symbol	Name	Function Class
Rr583417	regulatory region 583417	6 bp distal
Rr583418	regulatory region 583418	57 bp distal
Rr583419	regulatory region 583419	1911 bp proximal
Vav3	vav 3 oncogene	Intron