rs29731239 SNP Detail

Summary

• ID
  rs29731239
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:92269710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAA AGAAATGATG TTCCAGCAGC
  Y
  TCAAAAGAAA ACTAGTGAAA CCCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39112468	mCV24963378	ABI	CRAMUS_MOUSE	f	SNP		C	C				T	C
ss52681579	NES15521798	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C		C	C		T	C	T		C
ss144931615	ENSMUSSNP3608404	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					C
ss324479876	CHEV_13_92903157	CHEVERUD	SCREENING_POP	f	SNP										C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29731239					SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52681579	NES15521798	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:92269710 () rs orientation: forward

Symbol	Name	Function Class
Rasgrf2	RAS protein-specific guanine nucleotide-releasing factor 2	1546 bp upstream
Rr483653	regulatory region 483653	1056 bp distal
Tssr4138	transcription start site region 4138	1641 bp upstream
Tssr123423	transcription start site region 123423	1522 bp upstream
Tssr123424	transcription start site region 123424	1393 bp upstream
Tssr123425	transcription start site region 123425	1365 bp upstream
Tssr123426	transcription start site region 123426	1336 bp upstream
Tssr123427	transcription start site region 123427	1316 bp upstream