rs29729446 SNP Detail

Summary

• ID
  rs29729446
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:86412644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCACA TTTTAAGGGA CTGCGTATTT
  R
  CAGTAGCAGT TTGGGGTGAT TCTCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss39611152	mCV23896701	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	G
ss147658583	ENSMUSSNP4095428	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G		G
ss325714166	CHEV_18_86563911	CHEVERUD	SCREENING_POP	f	SNP					G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs29729446					SNP	A	G	A	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:86412644 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm54041	predicted gene, 54041			744 bp upstream
Neto1	neuropilin (NRP) and tolloid (TLL)-like 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr542239	regulatory region 542239			742 bp distal
Rr542240	regulatory region 542240			241 bp distal
Rr542241	regulatory region 542241			within coordinates
Rr542242	regulatory region 542242			523 bp proximal
Tssr152242	transcription start site region 152242			253 bp upstream
Tssr152243	transcription start site region 152243			274 bp upstream
Tssr152244	transcription start site region 152244			291 bp upstream
Tssr152245	transcription start site region 152245			399 bp upstream
Tssr152246	transcription start site region 152246			433 bp upstream
Tssr152247	transcription start site region 152247			483 bp upstream
Tssr152248	transcription start site region 152248			665 bp upstream
Tssr152249	transcription start site region 152249			756 bp upstream
Tssr152250	transcription start site region 152250			1027 bp upstream