rs29727391 SNP Detail

Summary

• ID
  rs29727391
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119452137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGGTAAA TGATAAATTG
  TGTGAGAAGA GCCAAGCTCA GAGGTTGAGC CTATCATAAG TGTGTGGAAT CATAGACACA
  CAAGAAACAG GAACTGAGCA GCAATAGGTT TTTACCTCCC TTGTGATGCA GATACAGGCC
  AGATTAGAGC AGATTAAAAA GTAGACAAAA GCAGGTGCAT TAGAAGGCAG ATCTCAGGTG
  K
  GCTTACTGAT CTCACAGTGG AGGGGTCAGC TAGGAGCTGG GATTGCATCC ATGTATGGTC
  AAAAACTGAG CCCCTAGCTG GGCACTTGGT GGATTGCTGG AGACTAGGAG TGATGACATG
  TTAACCCGAA GTCTTCTCTG CAGACAGCTT GTGGGAAGTA GGACAGGCGG GCTTTTCCAG
  CTTGTACAGG GCAAGCAAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45358311	mCV22554053	ABI	CRAMUS_MOUSE	f	SNP	T	G	G
ss147337226	ENSMUSSNP7134124	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29727391					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119452137 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nusap1	nucleolar and spindle associated protein 1			Intron
				Noncoding-Transcript-Variant
Rr563553	regulatory region 563553			1014 bp distal
Rr563554	regulatory region 563554			705 bp distal