rs29727387 SNP Detail

Summary

• ID
  rs29727387
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144113000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCGCCTCGCT TTGGGAAAGC GCGGGACCGA TGAAAGTACG
  GGTCCCGAGA GGGTTGTTTG CGGGCTGGGT GTTACAGCGT GGTGGCATCT CAGGTACAGC
  Y
  AGAACCCTGC CGCTGACCGA CCTTCTATTT AAATACTCTC TTCCCTATCC AAACTCGGGC
  ACGAAGGGCC ACGCTTGTCC TGTCGCAGCC ATGGGAGAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45358305	mCV22516079	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss147789067	ENSMUSSNP5642163	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs29727387					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144113000 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12351	CpG island 12351			within coordinates
Mgme1	mitochondrial genome maintenance exonuclease 1			Intron
				mRNA-UTR
				Splice-Site
Rr397362	regulatory region 397362			28 bp downstream
Rr397363	regulatory region 397363			336 bp upstream
Rr566424	regulatory region 566424			1568 bp distal
Rr566425	regulatory region 566425			519 bp distal
Rr566426	regulatory region 566426			129 bp distal
Rr566427	regulatory region 566427			within coordinates
Snx5	sorting nexin 5			287 bp upstream
Tssr20524	transcription start site region 20524			489 bp downstream
Tssr20525	transcription start site region 20525			408 bp downstream
Tssr20526	transcription start site region 20526			131 bp downstream
Tssr20527	transcription start site region 20527			25 bp downstream
Tssr20528	transcription start site region 20528			548 bp upstream
Tssr26594	transcription start site region 26594			1012 bp upstream
Tssr26595	transcription start site region 26595			594 bp upstream
Tssr26596	transcription start site region 26596			547 bp upstream
Tssr26597	transcription start site region 26597			280 bp upstream
Tssr26598	transcription start site region 26598			233 bp upstream
Tssr26599	transcription start site region 26599			217 bp upstream