GGTCCAGTAG GCTTACTCAC TTCGGTCTGA CACTCATCAT TTCCCACACT GAGCTTTGTC CCAGGGAACC TGGTCTTAGG AAGGCCCTCC AGAGTGGAAA Y GGGGTCCTGG TTATCTGCAA CCCCGGCCTG GAAAATGTTT GAATAATAAA TAAATGTTTA TACATTTATA ATATATAAAT AATAAATTAA TAAATAAAT Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss39608413 | mCV23424471 | ABI | CRAMUS_MOUSE | f | SNP | C | C | T | C | |||||||||||||||
ss50501568 | NES13695674 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | C | C | C | C | C | C | T | C | C | C | C | C | C | ||||
ss147551826 | ENSMUSSNP1166441 | ENSEMBL | ENSEMBL_Sanger | f | SNP | C | C | C | ||||||||||||||||
ss325701884 | CHEV_18_77742051 | CHEVERUD | SCREENING_POP | f | SNP | C | C | |||||||||||||||||
SNP Consensus Information | ||||||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
||||
rs29725744 | SNP | C | C | C | C | C | C | C | T | C | C | T | C | C | C | C | C | C | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss50501568 | NES13695674 | PERLEGEN | MM_PANEL | f | SNP | C/T |
Location: Chr18:77591008 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Ark2c | arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Cpgi10275 | CpG island 10275 | 766 bp distal | ||||||
Rr541132 | regulatory region 541132 | 712 bp distal | ||||||
Rr541133 | regulatory region 541133 | 1627 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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