rs29725744 SNP Detail

Summary

• ID
  rs29725744
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:77591008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTCCAGTAG GCTTACTCAC TTCGGTCTGA CACTCATCAT
  TTCCCACACT GAGCTTTGTC CCAGGGAACC TGGTCTTAGG AAGGCCCTCC AGAGTGGAAA
  Y
  GGGGTCCTGG TTATCTGCAA CCCCGGCCTG GAAAATGTTT GAATAATAAA TAAATGTTTA
  TACATTTATA ATATATAAAT AATAAATTAA TAAATAAAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39608413	mCV23424471	ABI	CRAMUS_MOUSE	f	SNP		C	C					T		C
ss50501568	NES13695674	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C	C	T	C		C	C	C	C		C
ss147551826	ENSMUSSNP1166441	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
ss325701884	CHEV_18_77742051	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29725744					SNP	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50501568	NES13695674	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77591008 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ark2c	arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C			Intron
				Noncoding-Transcript-Variant
Cpgi10275	CpG island 10275			766 bp distal
Rr541132	regulatory region 541132			712 bp distal
Rr541133	regulatory region 541133			1627 bp proximal