rs29723806 SNP Detail

Summary

• ID
  rs29723806
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:77591969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCTAGAAAT AGTCAGCTGT GCCCACGGCT TGCCAGTGGT
  ACTGTCATTT GGTGTGAGCT TCCTGAGTAA CAGTTTGGCA ATAGGCACAG GAAGGCATAA
  Y
  CCCAGTCGAC TGACAGCTCC ACTTGGCATC CTGAAGACAG CCATGCATGC GCACCTTCAT
  GGGGCTAAGC ATACAAGTGT AGTGCGGCTG CTAAGTGTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39610445	mCV23424470	ABI	CRAMUS_MOUSE	f	SNP		C	T	C
ss147551888	ENSMUSSNP6216319	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss325701894	CHEV_18_77743012	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29723806					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77591969 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ark2c	arkadia (RNF111) C-terminal like ring finger ubiquitin ligase 2C			Intron
				Noncoding-Transcript-Variant
Cpgi10275	CpG island 10275			1727 bp distal
Rr541132	regulatory region 541132			1673 bp distal
Rr541133	regulatory region 541133			666 bp proximal