rs29722179 SNP Detail

Summary

• ID
  rs29722179
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:143824269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATCCTGGGC ACAGCTACTG AGGCAGCAGT GGTACTCCAA
  ACACTTTAGT TCAGAGGAGT GTTCACTTCA AGGATTCTAC TCATTCCCAG TCCCTAAGCA
  Y
  TCAGTAAAGA ACCCCTGCTT TCTACTTCAC AGGCCAGTGT TTCCTCCTCC TTCCACACGA
  GAGCTTGTAA CACTCCTTTG CAATACAAAC CCTTCTCAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45357059	mCV22374145	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss147777043	ENSMUSSNP682452	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29722179					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:143824269 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr373991	regulatory region 373991			within coordinates
Rr566349	regulatory region 566349			846 bp distal
Rr566350	regulatory region 566350			1356 bp distal
Rr566351	regulatory region 566351			within coordinates
Rr566352	regulatory region 566352			662 bp proximal
Rr566353	regulatory region 566353			1261 bp proximal
Rrbp1	ribosome binding protein 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr26572	transcription start site region 26572			815 bp downstream