rs29722040 SNP Detail

Summary

• ID
  rs29722040
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101868057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAGGCCC TGAGGCAAGA
  GCATGGCGAG TCTGAGAAAC AGAAAGGAGA TTTTTCGCTG TGGGAGAAGT GGAGGTCACA
  CGTAGCTGAG AGACTAAAAG GGCATTGTGT AGTTCACAGT GAAAAGTACG GCCACGGGGG
  CGGGGGAGTG ATTTAGGTTT GCAAGCATTC GGACCTATAT AAAGAAAAAG TGTGATGGTG
  M
  ATGTTTATAG TCCCAGAAAT TGGGAGGTAA AGACAGGAGG ATTCCTGGGG TTCACTGACC
  AACCTACCCT GGGCGAACCA ATGGGTGTTA GTTCTTCAGG AGAAAGGTAG GTAGAGTAAA
  AAGAATTTTT TACTCTGCTT CTCTTATTCA TACATATATA CATGTATGCA TATATATGTA
  TATAATATAT ATGTATACAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45356068	mCV25361145	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	A	A
ss147097797	ENSMUSSNP4262374	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C		A
ss320433828	CHEV_2_101877869	CHEVERUD	SCREENING_POP	f	SNP						C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29722040					SNP	A	A	C	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101868057 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad3	low density lipoprotein receptor class A domain containing 3	Intron
Rr367252	regulatory region 367252	1700 bp upstream
Rr561615	regulatory region 561615	63 bp distal
Rr561616	regulatory region 561616	657 bp distal
Rr561617	regulatory region 561617	1225 bp proximal
Rr561618	regulatory region 561618	1337 bp proximal
Rr561619	regulatory region 561619	1928 bp proximal
Tssr19089	transcription start site region 19089	1883 bp upstream
Tssr19090	transcription start site region 19090	1904 bp upstream
Tssr19091	transcription start site region 19091	1934 bp upstream