rs29719962 SNP Detail

Summary

• ID
  rs29719962
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172598607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCCAGCTCT TTCAAGGCTG GAAACGAGGC TTTGAGCGTG
  CCAAGGGCTC TGTGCCTGTG TGCTGGGCAA AGCTGAGGGC TGGCTGCATT TAGCGTGAGC
  W
  CTAAAGCACC TCCTCTGGTT TCCAGGATTT GCAGAAATGC CAGCTTCAAG GGACAGCTCA
  GACTTTAGGG AGTCACCCTC AGATACAGGG GAGAGCTAG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45355158	mCV22949992	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	A
ss148322268	ENSMUSSNP3103693	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A
ss320620073	CHEV_2_172582315	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29719962					SNP	A	A	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172598607 () rs orientation: forward

Symbol	Name	Function Class
Gm74644	predicted gene, 74644	1706 bp downstream
Rr571720	regulatory region 571720	within coordinates
Rr571721	regulatory region 571721	502 bp proximal
Rr571722	regulatory region 571722	1406 bp proximal
Rr571723	regulatory region 571723	1889 bp proximal