rs29719827 SNP Detail

Summary

• ID
  rs29719827
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:15030063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCATCTCT GCTTCCTGTC
  TAGGAAGCAG TGTGACTTCT ATGTGACAGG CTGCATCCTC AAATTGTGAT TCTAATACAT
  TTGCAAGAAA AATAATTAAC ACAAGGCTCA AATTTGTGCT GTAAAACTTG CAGGCACCAG
  AGGAGGTCTC TGGAACAAGT ATCTCTGTTC TGTTGATTCA CATTCCATCC GGCATTCCTC
  M
  GCTGAGTTTA TTCAGCCGAG AGGGAGCTTA TGTGATTCTA TGGAAGATAA ACACGCTTTA
  AAGAGAACAG AGACTCACAC ATATAAATGT GAATCATTTT CTAAAAACAG ACTTACTTTG
  CAAATAAAAA ACAGAATAGA CATAAGTTCT AGTTCGAAAA CAGCTTGTTC TAGCAATACA
  ATGAATGGTT GAATAGGACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49562103	NES12903057	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C		A	C	C	A		C
ss320668317	CHEV_3_14965003	CHEVERUD	SCREENING_POP	f	SNP											C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29719827					SNP	C	C	C	C	C	C	A	C	C	C	C	A	C	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49562103	NES12903057	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:15030063 () rs orientation: forward

Symbol	Name	Function Class
Rr573739	regulatory region 573739	419 bp proximal