rs29719083 SNP Detail

Summary

• ID
  rs29719083
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:15030473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAAAGAAT ATACTAAATT
  TTTATTTCTG GGTATCTCTT CCAGAGGAAT AGACATGAAT GCATATATAC ATTATTATCA
  TTGTATGATT TCTATAGTGA AAAACTGGAA ACTAAGCACA AATTGATGAG GTATAGGGTA
  TAGTCGTTGA ATTTTACAAG CCAAGCCAGA GCTGGCAACA TTTTGCTTCT ATAACTGAAA
  R
  CAAAGATAGC ATATTGAGTG CTCATTTGAT CTGATGGTAG GAAACAAACA CTGGCTTAGG
  ACTGTCTGTT TTGTTCCCCT GGGACATCTT TTAAAATCCC AACTCCTAAA GGATTGCCAG
  GCTTGGGTCT TCATGCCTTC TGGGTGTCTG ATCCCTCTTG TGTCCATGGA GGTAAGATAC
  CACCTTCCGG ACATGGACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49562099	NES12903069	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		G	A	A	G		A
ss320668322	CHEV_3_14965413	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29719083					SNP	A	A	A	A	A	A	G	A	A	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49562099	NES12903069	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:15030473 () rs orientation: forward

Symbol	Name	Function Class
Rr573739	regulatory region 573739	9 bp proximal
Rr573740	regulatory region 573740	1854 bp proximal