rs29719078 SNP Detail

Summary

• ID
  rs29719078
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:15031326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTAAACTG CACAAATTTT
  AATTTGATTT TTACAAATTA AAATAAAAAA TACATTTTTT TTGGAAAGTT TTGTTTTAAG
  GCCTTCATGA ATATATTTTT TTAAAACATG ATTTTCTAAA GTCTACTTGG AAACTTGAAA
  GTTGAGACAC AACAGATTCC TTGAGAAATT TTAGACTTTT GCTGAAGAAG TGAGTGTATC
  W
  AACCAAAGGA AGCAAGGGTA GGGAATATGT GTGAGGAAGA ACACATCAAT CTTCATTAAT
  GTTTTCACAC TTGCCCTCAT TACCACTAAA ATAGAATGAA ACAAAACTAT AGTGAATTCA
  CATTAGGAAC TTGTATGTGT CATGAAAAAT AAGTTTTTAT GGGACTTGGA AATAGATGAG
  AAAAGTAAAT TACAACAAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49562094	NES12903080	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A		T	A	A	T		A
ss320668326	CHEV_3_14966266	CHEVERUD	SCREENING_POP	f	SNP											A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29719078					SNP	A	A	A	A	A	A	T	A	A	A	A	T	A	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49562094	NES12903080	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:15031326 () rs orientation: forward

Symbol	Name	Function Class
Rr573739	regulatory region 573739	235 bp distal
Rr573740	regulatory region 573740	1001 bp proximal